Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs72703072 chr5:590626 A/G 0 100 15.02 14.8 6.33 KM Plot
SKCM rs72703075 chr5:592819 C/T 0 96 14.7 13.4 6.33 KM Plot
SKCM rs72703078 chr5:594987 A/C 0 99 15.13 12 6.33 KM Plot
SKCM rs72703079 chr5:595173 T/C 0 99 15.13 12 6.33 KM Plot
SKCM rs72703080 chr5:595238 A/G 0 97 15.13 14.8 6.33 KM Plot
SKCM rs72703083 chr5:595365 C/T 0 98 15.02 12 6.33 KM Plot
SKCM rs72703087 chr5:598029 C/T 0 98 15.02 12 6.33 KM Plot
SKCM rs72703090 chr5:598314 C/T 0 99 15.13 12 6.33 KM Plot
SKCM rs72703092 chr5:599269 G/A 0 99 15.13 12 6.33 KM Plot
SKCM rs72703095 chr5:601789 T/C 0 100 15.13 13.4 6.33 KM Plot
SKCM rs72704799 chr5:551457 C/G 0 96 15.3 12 6.33 KM Plot
SKCM rs72704802 chr5:554211 C/T 0 100 15.3 12 6.33 KM Plot
SKCM rs72706606 chr5:558609 T/C 0 100 15.3 14.7 6.33 KM Plot
SKCM rs72706608 chr5:559203 C/T 0 100 15.3 14.7 6.33 KM Plot
SKCM rs72706610 chr5:561111 G/A 0 101 15.3 13.35 6.33 KM Plot